Publications

If you have used the STAToolkit in published research, please add the citation(s) below.

  1. Chen, J.-Y. (2010). A simulation study investigating the impact of dendritic morphology and synaptic topology on neuronal firing patterns. Neural Computation, 22(4), 1086-1111.
  2. Di Lorenzo, P.M., Chen, J.-Y., and Victor, J.D. (2009). Quality time: Representation of a multidimensional sensory domain through temporal coding. J. Neurosci., 29, 9227-9238.
  3. Di Lorenzo, P.M., and Victor, J.D. (2007). Neural coding mechanisms for flow rate in taste-responsive cells in the nucleus of the solitary tract of the rat. J. Neurophysiol., 97, 1857-1861; doi:10.1152/jn.00910.2006.
  4. Dorval, A.D. (2008). Probability distributions of the logarithm of inter-spike intervals yield accurate entropy estimates from small datasets. J. Neurosci. Meth., 173, 129-139.
  5. Goldberg, D.H., Gardner, E.P., Gardner, D., and Victor, J.D. (2006). Metric space analysis of neuronal ensembles in parietal cortex during prehension. (Abstract) Program No. 147.7. Washington, DC: Society for Neuroscience.
  6. Goldberg, D.H., Victor, J.D., Gardner, E.P., Gardner, D. (2009). Spike train analysis toolkit: Enabling wider application of information-theoretic techniques to neurophysiology. Neuroinformatics, 7(3), 165-178.
  7. Huang, C., and Celikel, T. (2009). Network mechanism of spike timing. (Abstract). Program No. 78.19. Chicago, IL: Society for Neuroscience.
  8. Huetz, C., Philibert, B., and Edeline, J.-M. (2009). A spike-timing code for discriminating conspecific vocalizations in the thalamocortical system of anesthetized and awake guinea pigs. J. Neurosci., 29(2), 334-350.
  9. Kreuz, T., Chicharro, D., Andrzejak, R.G., Haas, J.S., and Abarbanel, H.D.I. (2009). Measuring multiple spike train synchrony. J. Neurosci. Meth., 183(2), 287-299.
  10. Roussin, A.T., Victor, J.D., Chen, J.-Y., and Di Lorenzo, P.M. (2008). Variability in responses and temporal coding of tastants of similar quality in the nucleus of the solitary tract of the rat. J. Neurophysiol., 99, 644-655; doi:10.1152/jn.00920.2007.
  11. Victor, J.D., Goldberg, D.H., and Gardner, D. (2007). Dynamic programming algorithms for comparing multineuronal spike trains via cost-based metrics and alignments. J. Neurosci. Meth., 161(2), 351-360; doi:10.1016/j.jneumeth.2006.11.001.
  12. Victor, J.D., and Nirenberg, S. (2008). Indices for testing neural codes. Neural Comput., 20(12), 2895-2936; doi:10.1162/neco.2008.10-07-633.