http://neuroanalysis.org/wiki/ 2010-07-31T00:19:27-04:00 http://neuroanalysis.org/wiki/ http://neuroanalysis.org/wiki/lib/images/favicon.ico text/html 2010-07-28T15:46:41-04:00 Chuck Alan Dorval http://neuroanalysis.org/wiki/doku.php/installation:platforms?rev=1280346401&do=diff Supported Platforms The STAToolkit is supported on many platforms. Below is a list of platforms on which the toolkit is known to be successfully installed and run. If your system is not listed, but you have the toolkit working, please add your configuration to the list. You can sort the table by clicking on the column heads. text/html 2010-06-04T12:26:25-04:00 Michael Repucci http://neuroanalysis.org/wiki/doku.php/usage:tutorials:data_import?rev=1275668785&do=diff Data import from CED's Spike II into STAToolkit The following Spike II script creates .stam and .stad files to import Spike II data, similar to that used by 'demo-directformal.m'. The spikes need to be in an event channel. A second event channel marks the beginning of trials of either repeated stimulus presentation (box checked) or random presentation (box not checked). The script only exports complete trials between cursor 1 and 2. Script provided with no warranty or promises. text/html 2010-06-03T15:18:06-04:00 Michael Repucci http://neuroanalysis.org/wiki/doku.php/usage:tutorials?rev=1275592686&do=diff Tutorials Below is a list of all STAToolkit user tutorials. As always, you may also want to take a look at the demos included in the toolkit. tutorials index text/html 2010-06-03T15:17:22-04:00 Michael Repucci http://neuroanalysis.org/wiki/doku.php/usage:tutorials:basic_use_and_chronux?rev=1275592642&do=diff Tutorial on basic STAToolkit use, data interchange with Chronux, and Chronux routines: Powerpoint version: PDF version: m-files, etc., referred to in above presentation: expected outputs for chronux-to-STAT demo: expected outputs for STAT-to-chronux demo: text/html 2010-04-21T14:43:12-04:00 Michael Repucci http://neuroanalysis.org/wiki/doku.php/feedback:publications?rev=1271875392&do=diff Publications If you have used the STAToolkit in published research, please add the citation(s) below. * Chen, J.-Y. (2010). A simulation study investigating the impact of dendritic morphology and synaptic topology on neuronal firing patterns. Neural Computation, 22(4), 1086-1111. * Di Lorenzo, P.M., Chen, J.-Y., and Victor, J.D. (2009). Quality time: Representation of a multidimensional sensory domain through temporal coding. J. Neurosci., 29, 9227-9238. * Di Lorenzo, P.M., and Victor, … text/html 2010-02-24T05:08:31-04:00 Jonathan D. Victor http://neuroanalysis.org/wiki/doku.php/usage:tips?rev=1267006111&do=diff Tips If you have short tips on how to make use of the STAToolkit, please add them here. If your contribution is very lengthy, consider putting together a separate tutorial page (e.g., mytutorial), and making a reference to it on this page. Utilities for summarizing a spike train data structure Sometimes it is useful to provide a “snapshot” of a data structure X, i.e., a brief summary of how many sites (channels) and categories (conditions), how many spikes, their times, etc. text/html 2010-01-18T17:37:47-04:00 Michael Repucci http://neuroanalysis.org/wiki/doku.php/installation:troubleshooting?rev=1263854267&do=diff Troubleshooting For most users, the Installation instructions suffice to help them get the STAToolkit installed properly. However, users do occasionally run into system-dependent issues, which require some troubleshooting. If you're having trouble with installation, please check this page to see if other users have encountered the same problem. And if you have successfully overcome an installation problem, please contribute your advice to this page, so that your experience may help others. text/html 2010-01-06T16:48:26-04:00 Michael Repucci http://neuroanalysis.org/wiki/doku.php/welcome?rev=1262814506&do=diff Introduction Welcome to the Spike Train Analysis Toolkit wiki. This wiki is a repository for user tips, feedback, questions (FAQ), tutorials, etc. on the use of the STAToolkit. Please feel free to contribute new pages or modify existing ones so that this resource becomes as helpful to you---the users---as possible. To do so, you must first login, creating a user name if necessary.